output_options.hpp

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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <seqan3/core/platform.hpp>
 
namespace seqan3
{
 
struct sequence_file_output_options
{
    bool        fasta_legacy_id_marker  = false;
    bool        fasta_blank_before_id   = true;
    uint32_t    fasta_letters_per_line  = 80;
    //TODO:
//     bool        fasta_charcounts        = false;
 
 
    bool        fastq_double_id         = false;
 
    bool        add_carriage_return     = false;
 
    bool        embl_genbank_complete_header  = false;
};
 
} // namespace seqan3